Aquaculture Development in Archipelago Domestication and Cultivation of Freshwater and Marine Fishes in Indonesia

Authors

Estu Nugroho (ed), National Research and Innovation Agency; Imron Imron (ed), National Research and Innovation Agency; Bambang Gunadi (ed), National Research and Innovation Agency; Rosmiati  (ed), National Research and Innovation Agency; Khairul Syahputra (ed), National Research and Innovation Agency

Keywords:

Indonesian endemic fish domestication, Indonesian endemic fish cultivation, Applied aquaculture, Fish breeding, Sustainable fisheries industry

Synopsis

This book is a guide to domesticating and cultivating freshwater and marine fishes in Indonesia, offering a concise and comprehensive approach. It bridges the gap between theory and practice, equipping readers with practical techniques for success in the aquaculture industry. The book covers key topics such as breeding programs, nutrition management, disease prevention and sustainable aquaculture practices. It explores the diverse species found in Indonesian waters, providing valuable guidance on their unique requirements. Readers will find detailed case studies, step-by-step guides, and expert tips that enhance understanding and application. The book provides deep understanding of the principles and techniques involved, ultimately enhancing productivity and sustainability in the Indonesian aquaculture industry.

This book is intended for researchers, academics, fish farmers and aquaculture enthusiasts, and caters to both beginners and experienced professionals. 

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Author Biographies

Estu Nugroho, National Research and Innovation Agency

Prof. Dr. Estu Nugroho holds a bachelor's degree in fisheries from the Bogor Agricultural Institute, Indonesia, a master's degree from Kochi University, Japan, and a doctorate degree from Tohoku University, Japan. He is currently working as a main researcher at the Center for Fisheries Research, BRIN, Indonesia. Dr. Nugroho has authored around 15 books, covering topics such as genetic management of brood stock, catfish agribusiness, aquaponic systems for fish and vegetable cultivation, superior tilapia, total aquaculture system for catfish farming, pearl catfish, genetics in breeding freshwater fisheries, and the practical guide to cultivating mighty catfish. 

Imron Imron, National Research and Innovation Agency

Dr. Imron Imron specializes in fish biodiversity, with a focus on fish breeding and domestication using both conventional and modern biotechnological methods. He earned his bachelor's degree in fisheries from Djuanda University, Indonesia and a master's degree in aquatic science from IPB University, Indonesia. Imron further obtained a PhD in zoology from The University of Queensland, Australia. His team has developed genetically enhanced strains of farmed fish, notably the African catfish. Presently, Imron holds the position of Principal Researcher and leads the Fish Domestication and Breeding Program at the Fisheries Research Center, National Research and Innovation Agency (BRIN).

Bambang Gunadi, National Research and Innovation Agency

Dr. Bambang Gunadi completed his bachelor's degree in aquaculture from Bogor Agricultural University (IPB University) in 1987. He obtained his master's aquaculture from the Asian Institute of Technology, Thailand in 1999, and his doctoral degree in aquaculture from Bogor Agricultural University in 2012. After working for 30 years at the Agency for Agricultural Research and Development and the Agency for Marine Affairs and Fisheries Research and Human Resources, he now serves as senior researcher at the National Research and Innovation Agency (BRIN) under The Research Center for Fishery. He has published expertise on water quality management, aquaculture systems, biofloc technology, fish culture and fish breeding. 

Rosmiati , National Research and Innovation Agency

Dr. Rosmiati received a B.S. in chemistry from the Hasanuddin University Makassar in 1997. She currently works at National Research and Innovation Agency Indonesia. She has finished master's and doctoral degree in Natural Product Chemistry and Biotechnology in Universiti Putra Malaysia and Universiti Malaysia Terengganu, respectively. Her research interest includes utilization of herbs for disease control and fish reproduction, natural product chemistry, domestication and breeding, and biotechnology. 

Khairul Syahputra, National Research and Innovation Agency

Dr. Khairul Syahputra received his bachelor's degree in marine science from Riau University in 2005 and his master's degree in biotechnology from IPB University in 2008. He completed his PhD degree in immunology and infectious diseases from University of Copenhagen, Denmark in 2020. He was a postdoctoral fellow in the Institute for Fish and Wildlife Health, University of Bern, Switzerland in 2023-2024 funded by the SWISS government excellence scholarships (ESKAS). After 12 years doing research at the Research Institute for Fish Breeding, Ministry of Marine Affairs and Fisheries (MMAF), Indonesia, he currently works as researcher at Research Center for Fishery, National Research and Innovation Agency of Republic of Indonesia (BRIN). His research interests include aquaculture, genetic and fish breeding, focusing on genetic marker, genetic engineering, gene expression and omics studies, and disease resistances. 

References

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Nugroho, E. (2004). Jantanisasi ikan dengan sistem resirkulasi tertutup [Masculinization of fish using a closed recirculation system]. TROBOS, 56/Tahun ke-V/Mei.

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Nugroho, E. (2018). Aplikasi ilmu genetika dalam pemuliaan perikanan air tawar [Application of genetic science in freshwater fish breeding]. Amafrad Press.

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Nugroho, E., Takagi, M., Sugama, K., & Taniguchi, N. (1998). Detection of GT repeats microsatellite loci and their polymorphism for grouper of the genus Epinephelus. Fisheries Science, 65(3), 836–837.

Nugroho, E., Taniguchi, N., Kato, K., & Miyashita, S. (2000). Genetic difference among seed population of greater amberjack used in aquaculture farm of Japan. Suisanzoshoku, 48(4), 665–674.

Nugroho, E., Ferrel, D. J., Smith, P., & Taniguchi, T. (2001). Genetic divergence of kingfish from Japan, Australia and New Zealand inferred by microsatellite DNA and mitochondrial DNA control region markers. Fisheries Science, 67(5), 843–850.

Nugroho, E., Subagja, J., Asih, S., & Kurniasih, T. (2006). Evaluasi keragaman genetik ikan kancra dengan menggunakan marker MtDNA D-loop dan Random Amplified Polymorphism DNA (RAPD) [Evaluation of genetic diversity in kancra fish using MtDNA D-loop markers and Random Amplified Polymorphic DNA (RAPD)]. Jurnal Riset Akuakultur, 1(2), 211–217.

Nugroho, E., Alimuddin, Kristanto, A. H., Carman, O., & Megawati, N. (2008). Kloning cDNA hormon pertumbuhan dari ikan gurame (Osphronemus gouramy) [Cloning of growth hormone cDNA from gourami fish (Osphronemus gouramy)]. Jurnal Riset Akuakultur, 3(2), 183–190.

Nugroho, E., Alimuddin, Kristanto, A. H., & Charman, O. (2009). Kloning Promoter beta aktin dari ikan gurame (Osphronemus gouramy) [Cloning of beta-actin promoter from gourami fish (Osphronemus gouramy)]. Jurnal Riset Akuakultur, 4(1), 23–29.

Nugroho, E., Saepudin, & Bajar, M. (2013). Kajian lapang penggunaan benih nila (O. niloticus) hasil pemuliaan di keramba jaring apung Jatiluhur [Field study on the use of selectively bred tilapia (O. niloticus) seeds in floating net cages at Jatiluhur]. Jurnal Riset Akuakultur, 8(1), 43–49.

Nugroho, E., Azrita, Syandri, H., & Refilza. (2016). Evaluasi keragaman genetik ikan kalui (Osphronemus goramy) dari Kabupaten Lima Puluh Kota Sumatera Barat berdasarkan marka Random Amplified Polymorphism DNA (RAPD) [Evaluation of genetic diversity in kalui fish (Osphronemus goramy) from Lima Puluh Kota Regency, West Sumatra, based on Random Amplified Polymorphic DNA (RAPD) markers]. Jurnal Riset Akuakultur, 11(4), 313–319.

Nugroho, E., Azrita, Syandri, H., & Dewi, R. R. S. P. (2019). DNA barcoding of giant gourami (Osphronemus goramy) from West Sumatra, Indonesia. AACL Bioflux, 12(4), 1074–1079.

Nugroho, E., Astuti, A., Yulaeni, F., Praninda, P. Y., Putra, R. K., Suprayitno, S., Hariyanti, D. A., Sutandi, L., & Irvani, F. (2020a). Sekuense Mt-DNA CO-1, karakter reproduksi, dan toleransi terhadap lingkungan dari udang galah Bengawan Solo [Mt-DNA CO-1 sequencing, reproductive characteristics, and environmental tolerance of giant freshwater prawns from Bengawan Solo]. Jurnal Riset Akuakultur, 15(1), 1–8.

Nugroho, E., Khakim, A., & Dewi, R. S. S. P. (2020b). The performance of tilapia culture in biofloc technology (BFT) and floating net cage (KJA) system as a candidate for the next tilapia culture in Indonesia. IOP Conference Series: Earth and Environmental Science, 521, 012020-1–8. https://doi.org/10.1088/1755-1315/521/1/012020

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Nugroho, E., Kristanto, A. H., Pamungkas, W., Dewi, R. S. S. P., & Rifaldi, M. (2023). Optimizing tilapia biofloc technology systems and its economic profitability on an industrial scale in Indonesia. IOP Conference Series: Earth and Environmental Science, 1137(1), 012061.

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Nugroho. E., Taniguchi, N., & Takagi, M. (1999). Isolation of greater amberjack microsatellite DNA and their application as genetic marker species of genus Seriola from Japan. Fisheries Science, 65(3), 353–357.

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Published

November 17, 2025

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978-981-95-1084-9