Bakteri: Biologi dan Ekologi pada Perairan

Authors

Asfie Maidie
Universitas Mulawarman

Keywords:

bakteri

Synopsis

Buku ini menjelaskan tentang bakteri pada perairan dengan perbandingan pada manusia yang lebih maju studinya. Buku terbagi ke dalam 9 BAB, dimana bab pertama menjelaskan tentang kerugian dan manfaat, dimana bakteri tidak hanya dipandang dari sebagai penyebab penyakit, tetapi lebih banyak kepada perannya dlam mikro ekoistem pada manusia dan pada perairan yang menjadi tujuan utama isi buku ini. Beberapa bab berisi mengenai biologi bakteri dan diusahakan berdasrkan pada studi-studi terakhir. Pada bab yang menyngkut kepada manusia, bakteri dipandang sebagai kawan atau simbiosis yang harus ada pada manusia. Sedang pada bab terakhir mengenai peran bakteri pada perairan yang sangat penting, tetapi masih belum banyak diteliti di indonesia. 

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Author Biography

Asfie Maidie, Universitas Mulawarman

Asfie Maidie, lahir di Tenggarong, Kabupaten Kutai, pada 30 Desember 1966. Pendidikan tinggi dimulai di Fakultas Pertanian Universitas Mulawarman pada tahun 1984 di Jurusan Perikanan. Kemudian, pada tahun 1995, ia menjadi staf pengajar di Fakultas Pertanian Universitas Mulawarman. Ia memperoleh beasiswa tugas belajar Monbusho (sekarang Monbukagakusho) dari pemerintah Jepang untuk program master dan dilanjutkan program doktor di Nihon University, Tokyo, setelah sebelumnya sekolah bahasa Jepang di Osaka Gaikoku-go Daigaku, Osaka. Pada tahun 1995 hingga 1998, oleh pembimbing utama, Prof. Yoshiaki Deguchi, ia diikutkan dalam proyek kerja sama antara Nihon University dan Pemerintah Tokyo Metropolitan dalam analisis kualitas air di Teluk Tokyo dan akuarium raksasa Tokyo Kassai Rinkai Koen serta studi ikan haze Acanthogobius flavimanus dan rumput laut nori Porphyra sp. di Teluk Tokyo. Studi pembentukan spesies (spesiasi) pada ikan serta bacteriology pada ikan dan air merupakan topik tesis dan disertasinya yang kedua-duanya ditulis dalam bahasa Jepang.
Selain tugas utama sebagai staf pengajar pegawai negeri sipil di Fakultas Perikanan dan Ilmu Kelautan Universitas Mulawarman sejak 2001, ia juga menjadi anggota tim dalam penyusunan analisis dampak lingkungan (ANDAL) dan studi lain dalam bidang kualitas air dan perikanan sejak tahun 1989 hingga saat ini. Penulis aktif mengikuti seminar ilmiah di dalam dan luar negeri, memberikan penyuluhan kepada masyarakat umum, serta menulis di koran dan jurnal ilmiah. Buku berjudul Bakteri Biologi dan Ekologi Perairan ini merupakan buku kedua setelah buku dengan judul Fauna Akuatik Sungai Sangatta dan Sungai Bengalon diterbitkan dengan kebaikan hati LIPI Press (sekarang Penerbit BRIN) dan diakuisisi dalam program Akuisisi Pengetahuan Lokal pada tahun 2020.

References

Abatenh, E., Gizaw, B., Tsegaye, Z. & Tefera, G. (2018). Microbial change on climate change: A review. Environment Pollution and Climate Change, 2(1), Artikel 1000147. https://doi.org/10.4172/2573-458X.1000147

Adpendi, A., Oktavia, M., & Marliantoni. (2020). Strategi pengembangan pit lake bekas tambang batubara sebagai obyek wisata di PT. MBT Kabupaten Bungo Provinsi Jambi. Mine Magazine, 1(2).

Adrianto, R. (2018). Pemantauan jumlah bakteri Coliform di perairan sungai Provinsi Lampung. Majalah TEGI, 10(1).

Agostini, V. O., Ritter, M. d. N., Macedo. A. J., Muxagata, E., & Erthal, F. (2017). What determines sclerobiont colonization on marine mollusk shells? PLoS ONE, 12(9), Artikel e0184745. https://doi.org/ 10.1371/journal.pone.0184745

Aguirre, M., & Collins, M. D. (1993). Lactic acid bacteria and human clinical infection. Journal of Applied Bacteriology, 75(2), 95–107.

Ahmed, S., Islam, Md. R., Ferdousi, J., & Iqbal, T. S. (2018). Probiotic Lactobacillus sp. with bioremediation potential of toxic heavy metals. Bangladesh Journal of Microbiology, 34(1), 43–46. https://doi.org/ 10.3329/bjm.v34i1.39605

Alfiansah, Y. R., Hassenrück, C., Kunzmann, A., Taslihan, A., Harder, J., & Gärdes, A. (2018). Bacterial abundance and community composition in pond water from shrimp aquaculture systems with different stocking densities. Frontiers in Microbiology, 9, Artikel 2457. https://doi.org/10.3389/fmicb.2018.02457

Ameen, F. A., Hamadan, A. M., & El-Naggar, M. Y. (2020). Assessment of heavy metals bioremediation efficiency of the novel marine lactic acid bacterium, Lactobacillus plantarum MF042018. Scientific Report, 10, Artikel 314. https://doi.org/10.1038/s41598-019-57210-3

Angelova, A. G., Ellis, G. A., Wijesekera, H. W., & Vora, G. J. (2019). Microbial compositioan and variability of natural marine plankton and biofouling communities from the Bay of Bengal. Frontiers in Microbiology, 10, Artikel 2738. https://doi.org/10.3389/fmicb.2019.02738

Anisafitri, J., Khairuddin, K., & Rasmi, D. A. C. (2020). Analisis total bakteri coliform sebagai indikator pencemaran perairan pada Sungai Unus Lombok. Jurnal Pijar MIPA, 15(3), 266–272.

Apa sih Enterobacter sakazakii itu? (2011, 10 Februari). Kompas.com. Diakses pada 10 Desember 2011, dari https://nasional.kompas.com/read/2011/02/10/08414748/~Blog%20Expert?page=all

Apprill, A., Miller, C. A., Van Cise, A. M., U’Ren, J. M., Leslie, M. S., Weber, L., Baird, R. W., Robbins, J., Landry, S., Bogomolni, A., & Waring, G. (2020). Marine mammal skin mikrobiotas are influenced by host phylogeny. Royal Society Open Science, 7(5), Artikel 192046. http://dx.doi.org/10.1098/rsos.192046

Aprilana, R., Rudiyanti, S., & Purnomo, P. W. (2014). Kanekaragaman jenis bakteri perairan dasar berdasarkan tipe tutupan permukaan perairan di Rawa Pening. Management of Aquatic Resources Journal (MAQUARES), 3(2), 119–128. https://doi.org/10.14710/marj.v3i2.5015

Arfi, R., & Bouvy, M. (1997). Colonisation de bambous par les communautés bactériennes et algales en lagune Ebrié (Côte d’Ivoire). Vie et Millieu, 47(3), 189–201.

Arisanty, D., Adyatma, S., & Huda, N. (2017). Analisis kandungan bakteri fecal coliform pada Sungai Kuin Kota Banjarmasin. Majalah Geografi Indonesia, 31(2), 51–60.

Asakawa, M. (1983). Structure of disaccharide from eel skin mucous glycoprotein and its linkage to protein moiety. Bulletin of Japanese Society of Scientific Fisheries, 49(10), 1601–1606.

Austin, B., & Allen-Austin, D. (1985). Microbial quality of water in intensive fish rearing. Journal Applied Bacteriology, 59(14), 207S–226S.

Azaïs-Bresco, V., Bresson, J. L., Guarner, F., & Cortier, G. (2010). Not all lactic acid bacteria are probiotics, …but some are. British Journal of Nutrition, 103(7), 1079–1081. https://doi.org/10.1017/S0007114510000723

Azeredo, H. M. C., Barud, H., Farinas, C. S., Vadconcellos, V. M., & Claro, A. M. (2019). Bacterial cellulose as a raw material for food and food packaging application. Frontiers in Sustainable Food Systems, 3, Artikel 7. https://doi.org/10.3389/fsufs.2019.00007

Bacosa, H. P., Erdner, D. L., Rosenheim, B. E., Setty, P., Seitz, K. W., Baker, B. J., & Liu, Z. (2018). Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana. crude oil. The ISME Journal, 12, 2532–2543.

Bacterium destroys industrial pollutant. (2000, 11 Juli). The Daily Yomiuri.

Badjoeri, M. (2018). Kelimpahan dan sebaran bakteri heterotrofik di danau rawa banjiran Sebangau, Kalimantan Tengah. LIMNOTEK Perairan Darat Tropis di Indonesia, 25(1), 39–45. https://dx.doi.org/10.14203/limnotek.v25i1.170

Bai, S., & Hou, G. (2020). Microbial communities on fish eggs from Acanthopagrus schlegelii and Halichoeres nigrescens at the XuWen coral reef in the gulf of Tonkin. PeerJ, 8, Artikel e8517. https://doi.org/10.7717/peerj.8517

Bai, S., Zhang, P., Zhang, C., Du, J., Du, X., Zhu, C., Liu, J., Xie, P., & Li, P. (2021). Comparative study of the gut microbiota among four different marine mammals in an aquarium. Frontiers in Microbiology, 12, Artikel 769012. https://doi.org/10.3389/fmicb.2021.769012

Baker, B. J., & Banfield, J. F. Microbial community in acid mine drainage. FEMS Microbiology Ecology, 44, 139–152.

Beimfohr, C., Krause, A., Amann, R., Ludwig, W., & Schleifer, K-H. (1993). In situ identification of Lactococci, Enterococci and Streptococci. System and Applied Microbiology, 16, 450–456.

Bekker, C. (1996). Epibionts on carapaces some Malacostracans from the Gulf of Thailand. Journal of Crustacean Biology, 16(1), 92–104.

Bell, G. R., Hoskins, G. E., & Hodgkiss, W. (1971). Aspects of the characterization, identification, and ecology of the bacterial flora associated with the surface of stream-incubating pacific salmon (Onchorhynchus) eggs. Journal of Fisheries Research Board of Canada, 28, 1511–1525.

Bellamy, J. E. C., Knop, J., Steele, E. J., Chaicumpa, W., & Rowley, D. (1975). Antibody cross-linking as a factor in immunity to cholera in infant mice. Journal of Infectious Disease, 132, 181–188.

Ben-Jacob, E., Cohen, I., & Gutnick, D. L. (1998). Cooperative organization of bacterial colonies: from genotype to morphotype. Annual Review of Microbiology, 52, 779–806.

Berg, H. C. (2005). Motile behavior of bacteria. Physics Today on the Web. Diakses pada 3 Maret, 2008, dari http://www.aip.org/pt/jan00/berg.htm

Bik, E. M., Costello, E. K., Switzer, A. D., Callahan, B. J., Holmes, S. P., Wells, R. S., Carlin, K. P., Jensen, E. D., Venn-Watson, S., & Relman, D. A. (2016). Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea. Nature Communications, 7, Artikel 10516. https://doi.org/10.1038/ncomms10516

Bio Explorer. (2021). Top 14 most infectious and deadliest diseases caused by bacteria. Diakses pada 17 Juli, 2022, dari https://www.bioexplorer.net/bacterial-diseases.html/

Blake, D., Leftley, J. W., & Brown, C. M. (1982). The Loch Eil project: The bacterial flora and heterotrophic nitrogen fixation in sediments of Loch Eil. Journal Experimental Marine Biology and Ecology, 56, 115–122.

Blaut, M. (1999). Oligonucleotide probes for the specific detection of microorganisms – Novel approach to study the gut microflora. DIFE. Diakses pada 5 September, 2000, dari http://www.dife.de/english/oligo.html

Bletz, M. C., Goedbloed, D. J., Sanchez, E., Reinhardt, T., Tebbe, C. C., Bhuju, S., Geffers, R., Jarek, M., Vences, M., & Steinfartz, S. (2016). Amphibian gut microbiota shifts differentially in structure community but converges on habitat-specific predicted functions. Nature Communications, 7, Artikel 13699. https://doi.org/10.1038/ncomms13699

Blotevogel, K. H., Fishcer, U., & Lupes, K. H. (1986). Methanococcus friseus sp. Nov., a new methylotrophic marine methanogens. Canadian Journal of Microbiology, 32, 127–131.

Bogosian, G., Morris, P. J. L., & O’Neil, J. P. (1998). A mixed culture recovery method indicated that enteric bacteria do not enter the viable but nonculturable state. Applied and Environmental Microbiology, 64, 1736–1742.

Bos, M. P., Robert, V., & Tomassen, J. (2007). Biogenesis of the Gram-negative bacterial outer membrane. The Annual Review of Microbiology, 61, 191–214.

Boyd, C. E. (1979). Water quality in warm water fish pond. Auburn University.

Boyd, C. E. (1982). Water quality management for pond fish culture. Elsevier Scientific Pubishing Company.

Boyd, C. E., Hollerman, W. D., Plumb, J. A., & Saeed, M. (1984). Effect of treatment with a commercial bacterial suspension on water quality in channel catfish ponds. The Progressive Fish-Culturist, 46, 36–40.

Brill, J. (t.t.). Methanosarcina barkeri fusaro. JGI Genome Portal. Diakses pada 8 Juli, 2008, dari https://genome.jgi.doe.gov/portal/metba/metba.home.html

Burkert, U., Warnecke, F., Babenzien, D., Zwirnmann, E., & Pernthaler, J. (2003). Members of a readily enriched beta-proteobacterial clade are common in surface water of a humic lake. Applied Environmental Microbiology, 69, 6550–6559.

Cahill, M. M. (1990). Bacterial flora of fishes: A review. Microbial Ecology, 19, 21–41.

Cavari, B., & Colwell, R. C. (1988). Effect of pollution on the bacterial community structure in the coastal waters of the Eastern Mediterranean Sea. Progress in Oceanography, 21(2), 147–157. https://doi.org/10.1016/0079-6611(88)90033-X

CELLAbeauti. (t.t.) CellaTox (clostridium botulinum toxin). Diakses pada 28 Februari, 2024, dari https://www.cellabeauti.com/CellaTox

Chew, A. G. M., & Bryant, D. A. (2007). Chlorophyll biosynthesis in bacteria: The origins of structural and functional diversity. The Annual Review of Microbiology, 61, 113–129.

Chiri, E., Isberg, S. R., Kaestli, M., Milic, M., Christian, K., & Gibb, K. (2017, 13–15 Februari). Characterization of bacterial microbiota of wild and farmed crocodile skins [Conference paper]. Australian Microbial Ecology (AusME) 2017, Melbourne, VIC, Australia.

Christita, M., Iwanuddin, Kafiar, Y., Tabba, S., & Mokodompit, H. S. (2018). Identifikasi bakteri pada air dari lahan bekas tambang nikel di Halmahera Timur. Jurnal WASIAN, 5(1), 35–42.

Cleveland Clinic. (2018). E. coli infection. Diakses pada 23 Februari, 2022, dari https://my.clevelandclinic.org/health/diseases/16638-e-coli-infection

Cogliati, S., Costa, J. G., Ayala, F. R., Donato, V., & Grau, R. (2016). Bacterial spores and its relatives as agents of mass destruction. Journal of Bioterrorism & Biodefense, 7(1), Artikel 141. https://doi.org/10.4172/2157-2526.1000141

Collins, M. D., Farrow, J. A. E., Phillips, B. A., Ferusu, S., & Jones, D. (1987). Classification of Lactobacillus divergens, Lactobacillus piscicola, and some catalase-negative, asporogenous, rod-shaped bacteria from poultry in a new genus, Carnobacterium. International Journal of Systematic Bacteriology, 37(4), 310–316.

Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Gaarayzabal, J., Garcia, P., Cai, J., Hippe, H., &. Farrow, J. A. E. (1994). The phylogeny of the Genus Clostridium: proposal of five new genera and eleven new species combinations. International Journal of Systematic Bacteriology, 44(4), 812–826.

Colston, T. C. (2017). The reptile gut microbiome: Its role in host evolution and community assembly [Disertasi]. University of Mississippi. https://egrove.olemiss.edu/etd/387

Connor, S. (2000, 2 Juli). A discovery that will touch the life of every person on the planet [THE INDEPENDENT a special section produced in cooperation with The Yomiuri Shimbun, page 7A]. The Daily Yomiuri Sunday.

Cooper, M. F., & Morita, R. Y. (1972). Interaction of salinity and temperature on net protein synthesis and viability of Vibrio marinus. Limnology and Oceanography, 17(4), 556–565.

Cotner, J. B., Hall, E. K., Scott, J. T., & Heldal, M. (2010). Freshwater bacteria are stoichiometrically flexible with nutrient composition similar to seston. Frontiers in Microbiology, 1, Artikel 132.

Cowan, S. T. (1965). Principles and practice of bacterial taxonomy – a forward look. Journal of General Microbiology, 39, 148–158.

Dash, S., Das, S. K., Samal, J., & Thatoi, H. N. (2018). Epidermal mucus, a major determinant in fish health: a review. Iranian Journal of Veterinary Research, Shiraz University, 19(2), 72–81.

Davis, R. A., & Weller, S. G. (1996). The gist of genetics: Guide to learning and review. Jones and Bartlett Publishers.

Day, R. A. (1995). How to write & publish a scientific paper (4th edition). Cambridge University Press.

de Carvalho., C. C. C. R. (2018). Marine biofilm: A successful microbial strategy with economic implications. Frontiers in Marine Science, 5(162). https://doi.org/10.3389/fmars.2018.00126

DeLeon-Rodriguez, N., Lathem, T. L., Rodriguez-R, L. M., Barazesh, J. M., Anderson, B. E., Beyersdorf, A. J., Ziemba, L. D., Bergin, M., Nenes, A., & Konstantinidis, K. T. (2013). Microbiome of the upper troposphere: Species composition and prevalence, Effects of tropical storms and atmospheric implications. PNAS, 110(7), 2575–2580.

Delort, A. M., Vaïtilingom, M., Joly, M., Amato, P., Wirgot, N., Lallement, A., Sancelme, M., Matulova, M., & Deguillaume, L. (2017). Clouds: A transient and stressing habitat for microorganisms. Dalam C. Chenard, & F. M. Lauro (Ed.), Microbial ecology of extreme environments (215–245). Springer.

Dick, G. J., Anantharaman, K., Baker, B. J., Reed, D. C., & Sheik, C. S. (2013). The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats. Frontier in Microbiology, 24, Artikel 124. https://doi.org/10.3389/fmicb.2013.00124

Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010). Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. PNAS, 107(26). http://www.pnas.org/cgi/doi/10.1073/pnas.1002601107

Drell, D. (2000, 30 Juni). Genomically speaking, Where will the map take us? [The Washington Post Supplemented in The Yomiuri Simbun Friday]. The Yomiuri Simbun Friday.

Dubos, R., Schaedler, R. W., Costello, R., & Hoet, P. (1965). Indigenous, normal, and autochthonous flora of the gastrointestinal tract. Journal of Experimental Medicine, 122, 67–76.

Dufrêne, Y. F., & Viljoen, A. (2020). Binding strength of Gram-positive bacterial adhesins. Frontiers in Microbiology, 11, Artikel 1457. https://doi.org/10.3389/fmicb.2020.01457

Dugdale, R. C., & Goering, J. J. (1967). Uptake of new and generated form of nitrogen in primary productivity. Limnology and Oceanography, 12, 196–206.

Easy Biology Class. (t.t.). Bacterial cell surface appendages. Diakses pada 23 Februari, 2024, dari https://www.easybiologyclass.com/bacterial-cell-surface-structures-and-appendages-flagella-fimbriae-and-pili/

Egan, S., Harder, T., Burke, C., Steinberg, P., Kjelleberg, S., & Thomas, T. (2013). The seaweed holobiont: Understanding seaweed-bacteria interactions. FEMS Microbiology Reviews, 37(3), 462–476.

Esdhat, Y., Speth, V., & Jann, K. (1981). Participation of pili and cell wall adhesin in the yeast agglutination activity of Escherichia coli. Infection and Immunity, 34, 980–986.

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June 27, 2024

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