Biodiversitas Bakteri dan Arkea untuk Kemajuan Riset dan Inovasi Bidang Kesehatan, Pangan, dan Lingkungan

Authors

Puspita Lisdiyanti
Badan Riset dan Inovasi Nasional
DOI: https://doi.org/10.55981/brin.721

Keywords:

biodiversitas, bakteri, arkea, kesehatan, pangan, lingkungan, mikrobiologi, Biosistematika, Bioteknologi, Bioekonomi

Synopsis

Pengungkapan biodiversitas, preservasi, dan pemanfaatan mikroorganisme perlu strategi sehingga dapat menghasilkan produk berdampak ekonomi dan juga berkontribusi pada daur ulang ekonomi untuk menjaga bumi. Bioekonomi dari suatu bioproduk harus sudah dipikirkan pada saat mulai melakukan riset dan inovasi untuk pemanfaatan mikroorganisme. Bioekonomi sirkular juga perlu dipertimbangkan sebagai strategi riset dan inovasi bakteri dan arkea untuk pembangunan berkelanjutan. Pada naskah ini, dipaparkan biodiversitas dan pengelolaan mikroorganisme Indonesia khususnya dari Domain Bakteri dan Arkea; beberapa contoh potensi untuk dikembangkan lebih lanjut dalam bidang kesehatan, pangan fungsional, dan lingkungan; perkembangan riset biodiversitas bakteri dan arkea; serta strategi untuk kemajuan riset dan inovasi di bidang kesehatan, pangan, dan lingkungan menuju Indonesia Emas 2045.

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Author Biography

Puspita Lisdiyanti, Badan Riset dan Inovasi Nasional

Menamatkan Sekolah Dasar Proyek Perintis Sekolah Pembangunan IKIP di Yogyakarta tahun 1980, Sekolah Menengah Pertama Negeri I di Yogyakarta tahun 1983, dan Sekolah Menegah Atas Proyek Perintis Sekolah Pembangunan IKIP di Yogyakarta tahun 1986. Memperoleh gelar Bachelor of Agriculture Chemistry (B. Agr. Chem.) dari Tokyo University of Agriculture and Technology, Jepang, tahun 1992 dengan beasiswa Overseas Fellowship Program (OFP) III dari Pemerintah Indonesia; memperoleh gelar Master of Agriculture Chemistry (M. Agr. Chem.) dari Tokyo University of Agriculture, Jepang, tahun 1999 dengan beasiswa Indonesia Petroleum (INPEX) Foundation; dan memperoleh gelar Doctor of Philosophy dari Tokyo University of Agriculture, Jepang, tahun 2002 dengan beasiswa Pemerintah Jepang Monbukagakusho.

Pernah mengikuti berbagai pelatihan yang terkait dengan bidang kompetensinya antara lain Pelatihan Metrologi Biologi dan Kimia di Laboratoire National de Metrologie et de’Essais (LNE) dan Institute Pasteur, Paris, Perancis tahun 2019, Workshop Keselamatan Parasit di Lingkungan, Makanan, dan Pencegahan Penyakit Parasit di Kursk, Rusia tahun 2019.

Menghasilkan seratus lima puluh dua (152) karya tulis ilmiah (KTI), baik yang ditulis sendiri, maupun dengan penulis lain dalam bentuk buku, jurnal, prosiding, dan artikel ilmiah populer. Sebanyak 110 KTI ditulis dalam bahasa Inggris dan 42 KTI ditulis dalam bahasa Indonesia. Menghasilkan satu naskah akademik Peraturan Presiden Republik Indonesia. Selain itu, telah dihasilkan 5 paten tersertifikasi dan 8 paten terdaftar.

Ikut serta dalam pembinaan kader ilmiah, yaitu sebagai pembimbing jabatan fungsional peneliti, pembimbing disertasi/tesis/skripsi/internship mahasiswa dan penguji disertasi di Tokyo University of Agriculture, Jepang; Hamburg University, Jerman; Wageningen University and Research, Belanda; Tubingen University, Jerman; IPB, ITB, ITS, I3L, UGM, UI, Unair, UNJ, Universitas Pancasila, Universitas Al Azhar, Universitas Pasundan, dan lain sebagainya. Selain itu juga pernah menjadi visiting lecturer di Tokyo University of Agriculture dan Dosen Tamu/Pakar Universitas Gadjah Mada, Universitas Hassanuddin, dan Universitas Pertahanan.

Aktif dalam organisasi ilmiah, yaitu pengurus di Asian Federation of Biotechnology – Indonesian Chapter sebagai General Secretary 2022–2026, Konsorsium Bioteknologi Indonesia sebagai Wakil Ketua 2021–2025, Perhimpunan Mikrobiologi Indonesia sebagai Koordinator Networking 2018–2022, JSPS Association Alumni Indonesia (JAAI) sebagai Ketua III 2015–2017.

Menerima tanda penghargaan Satya Lancana Karya Satya X Tahun tahun 2005, XX Tahun tahun 2008, dan XXX Tahun tahun 2017, serta Satya Lancana Pembangunan tahun 2013 dari Presiden Republik Indonesia. Menerima penghargaan Habibie Prize Bidang Bioteknologi dari Yayasan Pengembangan SDM Habibie dan Kementerian Riset dan Teknologi pada tahun 2020. Menerima Young Scientist Award Bidang Mikrobiologi dari Japan Society for Culture Collection tahun 2014.

References

Brooks TM, Mittermeier RA, Da Fonseca GAB, Gerlach J, Hoffmann M, Lamoreux JF, dkk. Global biodiversity conservation priorities. Science 2006 Jul 7;313(5783):58–61.

Donald PF, Fishpool LDC, Ajagbe A, Bennun LA, Bunting G, Burfield IJ, dkk. Important Bird and Biodiversity Areas (IBAs): the development and characteristics of a global inventory of key sites for biodiversity. Bird Conservation International 2019;29(2):177–98.

Davis SD, Heywood VH, Hamilton AC. Centres of plant diversity. Natural History. 1994;111(1):1.

Veron JEN, Devantier LM, Turak E, Green AL, Kininmonth S, Stafford-Smith M, dkk. Delineating the coral triangle. Galaxea, Journal of Coral Reef Studies 2009;11(2):91–100.

Myers N, Mittermeier RA, Mittermeier CG, Da Fonseca GAB, Kent J. Biodiversity hotspots for conservation priorities. Nature 2000 Feb 24;403(6772):853–8.

Mittermeier RA, Mittermeier CG, Brooks TM, Pilgrim JD, Konstant WR, Da Fonseca GAB, dkk. Wilderness and biodiversity conservation. Proceedings of the National Academy of Sciences 2003;100(18):10309–13.

Hoekstra JM, Boucher TM, Ricketts TH, Roberts C. Confronting a biome crisis: global disparities of habitat loss and protection. Ecology Letters 2004 ;8(1):23–9.

Bryant D, Nielsen D, Tangley L. The last frontier forests: ecosystems and economies on the edge. World Resources Institute 1709 New York Avenue NW, Washington DC 2006 USA 1997:41pp. ISBN 1-56973- 198-5.

Sanderson EW, Jaiteh M, Levy MA, Redford KH, Wannebo AV, Woolmer G. The human footprint and the last of the wild: the human footprint is a global map of human influence on the land surface, which suggests that human beings are stewards of nature, whether we like it or not. BioScience 2002 Oct 1;52(10):891–904.

Sukara E, Lisdiyanti P (Editor). Exploring Indonesian Microbial Genetic Resources for Industrial Application. Jakarta: LIPI Press; 2016: 1–221. DOI: https://doi.org/10.14203/press.291.

Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proceedings of the National Academy of Sciences 1990 Jun 1;87(12):4576–9.

Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, Seo H, dkk. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. International Journal of Systematic and Evolutionary Microbiology 2017 May;67(5):1613–17.

Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A, Chaumeil PA, dkk. A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Nature Biotechnology 2018;36(10):996–1004.

Gilbert JA, Stephens B. Microbiology of the built environment. Nature Reviews Microbiology 2018;16(11):661–70.

Lisdiyanti P, Kawasaki H, Widyastuti Y, Saono S, Seki T, Yamada Y, dkk. Kozakia baliensis gen. nov., sp. nov., a novel acetic acid bacterium in the alpha-proteobacteria. International Journal of Systematic and Evolutionary Microbiology 2002 May 1;52(3):813–8.

Yamada Y, Katsura K, Kawasaki H, Widyastuti Y, Saono S, Seki T, dkk. Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the alpha-Proteobacteria. International Journal of Systematic and Evolutionary Microbiology 2000 Mar 1;50(2):823–29.

Lisdiyanti P, Kawasaki H, Seki T, Yamada Y, Uchimura T, Komagata K. Systematic study of the genus Acetobacter with descriptions of Acetobacter indonesiensis sp. nov., Acetobacter tropicalis sp. nov., Acetobacter orleanensis (Henneberg 1906) comb. nov., Acetobacter lovaniensis (Frateur 1950) comb. nov., and Acetobacter estunensis (Carr 1958) comb. nov. The Journal of General and Applied Microbiology 2000;46(3):147–65.

Lisdiyanti P, Kawasaki H, Seki T, Yamada Y, Uchimura T, Komagata K. Identification of Acetobacter strains isolated from Indonesian sources, and proposals of Acetobacter syzygii sp. nov., Acetobacter cibinongensis sp. nov., and Acetobacter orientalis sp. nov. The Journal of General and Applied Microbiology 2001;47(3):119–31.

Lisdiyanti P, Navarro RR, Uchimura T, Komagata K. Reclassification of Gluconacetobacter hansenii strains and proposals of Gluconacetobacter saccharivorans sp. nov. and Gluconacetobacter nataicola sp. nov. International Journal of Systematic and Evolutionary Microbiology 2006 Sep 1;56(9):2101–11.

Hamada M, Shibata C, Nurkanto A, Ratnakomala S, Lisdiyanti P, Tamura T, Suzuki KI. Tropicihabitans flavus gen. nov., sp. nov., a new member of the family Cellulomonadaceae. Antonie van Leeuwenhoek 2015;107(5):1299–306.

Ratnakomala S, Lisdiyanti P, Widyastuti Y. Collection of Indonesian Actinomycetes and its uses. In Exploring Indonesian Microbial Genetic Resources. Jakarta: LIPI Press; 2016: 177–203. Ed. Sukara E, Lisdiyanti P.

Mori K, Nurcahyanto DA, Kawasaki H, Lisdiyanti P, Yopi, Suzuki KI. Haloarchaeobius baliensis sp. nov., isolated from a solar saltern. International Journal of Systematic and Evolutionary Microbiology 2016 Jan 1;66(1):38–43.

Mori K, Nurcahyanto DA, Kawasaki H, Lisdiyanti P, Yopi, Suzuki KI. Halobium palmae gen. nov., sp. nov., an extremely halophilic archaeon isolated from a solar saltern. International Journal of Systematic and Evolutionary Microbiology 2016 Oct 1;66(10):3799–804.

Lisdiyanti P, Katsura K, Potacharoen W, Navarro RR, Yamada Y, Uchimura T, Komagata K. Diversity of acetic acid bacteria in Indonesia, Thailand, and the Philippines. Microbiology and Culture Collection 2003;19(2):91–9.

Parker CT, Tindall BJ, Garrity GM. eds. International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2008 Revision). International Journal of Systematic and Evolutionary Microbiology 2019;69(1A): S1–S111.

Koonin EV, Makarova KS, Wolf YI. Evolution of microbial genomics: conceptual shifts over a quarter century. Trends in Microbiology 2021 Jul 1;29(7):582–92.

Parks DH, Chuvochina M, Rinke C, Mussig AJ, Chaumeil PA, Hugenholtz P. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. Nucleic Acids Research 2022 Jan 7;50(D1):D785–94.

Handayani I, Ratnakomala S, Lisdiyanti P, Fahrurrozi, Kusharyoto W, Alanjary M, dkk. Complete genome sequence of Streptomyces sp. strain SHP22-7, a new species isolated from mangrove of Enggano Island, Indonesia. Microbiology Resource Announcements 2018 Nov 21;7(20):e01317–18.

Handayani I, Ratnakomala S, Lisdiyanti P, Fahrurrozi, Alanjary M, Wohlleben W, dkk. Complete genome sequence of Streptomyces sp. strain BSE7F, a Bali mangrove sediment actinobacterium with antimicrobial activities. Genome Announcements 2018 Jun 28;6(26):e00618–18.

Krause J, Ratnakomala S, Lisdiyanti P, Ort-Winklbauer R, Wohlleben W, Mast Y. Complete Genome Sequence of the Putative Phosphonate Producer Streptomyces sp. Strain I6, Isolated from Indonesian Mangrove Sediment. Microbiology Resource Announcements 2019 Jan 24;8(4):e01580–18.

Handayani I, Saad H, Ratnakomala S, Lisdiyanti P, Kusharyoto W, Krause J, dkk. Mining Indonesian Microbial Biodiversity for Novel Natural Compounds by a Combined Genome Mining and Molecular Networking Approach. Marine Drugs 2021 Jun;19(6):316.

Belknap KC, Park CJ, Barth BM, Andam CP. Genome mining of biosynthetic and chemotherapeutic gene clusters in Streptomyces bacteria. Scientific Reports 2020 Feb 6;10(1):1–9.

Lee N, Hwang S, Kim J, Cho S, Palsson B, Cho BK. Mini review: genome mining approaches for the identification of secondary metabolite biosynthetic gene clusters in Streptomyces. Computational and Structural Biotechnology Journal 2020 Jan 1;18:1548–56.

Kautsar SA, van der Hooft JJ, de Ridder D, Medema MH. BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters. GigaScience 2021 Jan;10(1):giaa154.

Kautsar SA, Blin K, Shaw S, Weber T, Medema MH. BiG-FAM: the biosynthetic gene cluster families database. Nucleic Acids Research 2021 Jan 8;49(D1):D490–7.

Blin K, Shaw S, Kloosterman AM, Charlop-Powers Z, Van Wezel GP, Medema MH. AntiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Research 2021 Jul 2;49(W1):W29–35.

Peraturan Presiden Republik Indonesia Nomor 1 Tahun 2021 Tentang Pengelolaan Mikroorganisme. Lisdiyanti P sebagai salah satu penyusun naskah akademik kontributor utama.

Undang-Undang Republik Indonesia Nomor 13 Tahun 2016 Tentang Paten.

Undang-undang Republik Indonesia Nomor 11 Tahun 2019 Tentang Sistem Nasional Ilmu Pengetahuan dan Teknologi.

Blevins SM, Bronze MS. Robert Koch and the ‘golden age’of bacteriology. International Journal of Infectious Diseases 2010 Sep 1;14(9):e744–51.

Soman R, Kavitha MH, Shaji H. Metagenomics: a genomic tool for monitoring microbial communities during bioremediation. In Microbes and Microbial Biotechnology for Green Remediation 2022 Jan 1 (pp. 813-821). Elsevier.

Levine DP. Vancomycin: a history. Clinical Infectious Diseases 2006 Jan 1;42(Supplement_1):S5–12.

Pahira DS, Hertiani T, Lisdiyanti P, Ratnakomala S, Mustofa M. Isolation and Antimicrobial Screening of Actinomycetes from the Soil of Enggano Island, Indonesia. Key Engineering Materials 2020;840:284–290. Trans Tech Publications Ltd.

Utami A, Apriliana P, Kusnadi Y, Zilda DS, Ilmiah Z, Lisdiyanti P, dkk. Analyzing the biosynthetic potential of antimicrobial-producing actinobacteria originating from Indonesia. Indonesian Journal of Biotechnology 2021;26(3):142–51.

Meliah S, Sulistiyani TR, Lisdiyanti P, Kanti A, Sudiana I, Kobayashi M. Antifungal Activity of Endophytic Bacteria Associated with Sweet Sorghum (Sorghum bicolor). Journal of Mathematical and Fundamental Sciences 2021 Jan 1;53(1).

Setiawati S, Nuryastuti T, Sholikhah EN, Lisdiyanti P, Pratiwi SU, Sulistiyani TR, dkk. The potency of actinomycetes extracts isolated from Pramuka Island, Jakarta, Indonesia as antimicrobial agents. Biodiversitas Journal of Biological Diversity 2021 Feb 1;22(3).

Damayanti E, Lisdiyanti P, Sundowo A, Ratnakomala S, Dinoto A, dkk. Antiplasmodial activity, biosynthetic gene clusters diversity, and secondary metabolite constituent of selected Indonesian Streptomyces. Biodiversitas Journal of Biological Diversity 2021 Jun 5;22(6).

Rakhmawatie MD, Wibawa T, Lisdiyanti P, Pratiwi WR, Damayanti E. Potential secondary metabolite from Indonesian Actinobacteria (InaCC A758) against Mycobacterium tuberculosis. Iranian Journal of Basic Medical Sciences 2021 Aug;24(8):1058.

Pudjiraharti S, Takesue N, Katayama T, Lisdiyanti P, Hanafi M, Tanaka M, dkk. Actinomycete Nonomuraea sp. isolated from Indonesian soil is a new producer of inulin fructotransferase. Journal of Bioscience and Bioengineering 2011 Jun 1;111(6):671–4.

Yopi, Palar R, Lisdiyanti P, Rahmani N, Mafatikhul A, Apriliana P, dkk. Proses produksi xylooligosakarida (XOS) dengan menggunakan kompleks xylan yang diekstrak dari ampas tebu. Paten terdaftar 00201708604:30-Nov-2017.

Fahrurrozi F, Lisdiyanti P, Ratnakomala S, Fauziyyah S, Sari, MN. Teknologi fermentasi dan pengolahan biji kakao. Jakarta: LIPI Press; 2020: 1–75.

Fahrurrozi, Putri RE, Lisdiyanti P. Screening and activity of yeast-associated with cocoa-bean fermentation against phytopathogenic yeast and fungi. IOP Conference Series: Earth and Environmental Science 2020 Feb 1;439(1):012056. IOP Publishing.

Fahrurrozi, Fauziyyah S, Sari MN, Ratnakomala S, Lisdiyanti P. Quality of Chocolate Bar from Fermented Cocoa Beans from Lombok, West Nusa Tenggara. IOP Conference Series: Earth and Environmental Science 2019 Mar 1;251(1):012046. IOP Publishing.

Fahrurrozi, Lisdiyanti P. Inokulum untuk fermentasi biji kakao. Paten tersertifikasi IDP000070289:04-08-2020;P00201705052:31-07-2017.

Lisdiyanti P, Suyanto E, Gusmawati NF, Ratnakomala S, Fahrurrozi F. Penerapan bakteri penghasil enzim urease untuk mengeraskan tanah berpasir. Dalam Buku: Perspektif terhadap kebencanaan dan lingkungan di Indonesia: Studi kasus dan pengurangan dampak risikonya; Editor: Anwar HZ, Harjono H. Jakarta: LIPI Press; 2011: 109–123. ISBN 978-602-99893-0-4.

Lisdiyanti P, Suyanto E, Ratnakomala S, Fahrurrozi, Sari MN, Gusmawati NF. Bacterial carbonate precipitation for biogrouting. Proceedings National Symposium on Ecohydrology 2011:204–219. ISBN: 978-979-81633-15-9.

Suyanto E, Ratnakomala S, Fahrurrozi, Sari MN, Gusmawati NF, Lisdiyanti P. Presipitasi kalsium karbonat oleh bakteri biogrouting untuk biosementasi pasir. Prosiding Seminar Nasional Kimia Terapan Indonesia 2011:150–156. ISSN: 2008-9828.

Ainiyah S, Lisdiyanti P, Pertiwi SA, Prasetyo EN. Biogrouting: produksi urease dari bakteri laut (oceanobacillus sp.) pengendap karbonat. Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati 2016 Aug 31;1(1):9–18.

Nainggolan MJ, Rahayu W, Lisdiyanti P. Effect of urease enzyme on shear strength of clay shale. International Journal of Engineering and Technology (UAE) 2018 Jan 1;7(4.36 Special Issue 36):424–8.

Putri AR, Rahayu W, Lisdiyanti P. Effect of urease enzyme and clay mixture in shear strength properties of sand. MATEC Web of Conferences 2019;280:04014. EDP Sciences.

A’la H, Rahayu W, Lisdiyanti P. Effect of increasing urease enzim concentration on shear strength properties sand clay biocementation. IOP Conference Series: Earth and Environmental Science 2020 Feb 1;426(1):012029. IOP Publishing.

Suprapto YH, Soepandji BS, Rahayu W, Lisdiyanti P. Improvement of soil cohesion using microbial acitvity. Geotechnical Engineering. 2020 Dec;51(4):79–82.

Lisdiyanti P, Ratnakomala S, Fahrurrozi. Biomaterial berbasis presipitasi kalsit. Paten terdaftar P00201200697:30-Aug-2012.

Yetti E, Thontowi A, Yopi Y, Lisdiyanti P. Screening of marine bacteria capable of degrading various polyaromatic hydrocarbons. Squalen Bulletin of Marine and Fisheries Postharvest and Biotechnology 2015 Dec 20;10(3):121–7.

Lisdiyanti P, Yopi Y, Murniasih T. The investigation of polycyclic aromatic hydrocarbon and oil degrading bacteria isolated from the marina port Ancol, Jakarta Bay. Annales Bogorienses 2011;Dec 9;15(2):17–23.

Murniasih T, Lisdiyanti P. Biodegradation of polycyclic aromatic hydrocarbon (pah), phenanthrene by marine bacterium Thalassospira sp. C. 260. Marine Research in Indonesia 2010;35(1):55–62.

Kahar P, Rachmadona N, Pangestu R, Palar R, Adi DT, Juanssilfero AB, dkk. An integrated biorefinery strategy for the utilization of palm-oil wastes. Bioresource Technology 2022 Jan 1;344:126266.

Pangestu R, Kahar P, Kholida LN, Perwitasari U, Thontowi A, Fahrurrozi F, Lisdiyanti P, dkk. Harnessing originally robust yeast for rapid lactic acid bioproduction without detoxification and neutralization. Scientific Reports 2022 Aug 11;12(1):1–3.

Lisdiyanti P, Suyanto E, Gusmawati NF, Rahayu W. Isolation and characterization of cellulase produced by cellulolytic bacteria from peat soil of Ogan Komering Ilir, South Sumatera. International Journal of Environment and Bioenergy 2012;3(3):145–53.

Awasthi MK, Sindhu R, Sirohi R, Kumar V, Ahluwalia V, Binod P, dkk. Agricultural waste biorefinery development towards circular bioeconomy. Renewable and Sustainable Energy Reviews 2022 Apr 1;158:112122.

OECD (2009), The Bioeconomy to 2030: Designing a Policy Agenda, OECD Publishing, Paris, https://doi.org/10.1787/9789264056886-en.

Muscat A, de Olde EM, Ripoll-Bosch R, Van Zanten HH, Metze TA, Termeer CJ, dkk. Principles, drivers and opportunities of a circular bioeconomy. Nature Food 2021 Aug;2(8):561–6.

Tan EC, Lamers P. Circular bioeconomy concepts—A perspective. Frontiers in Sustainability 2021 Jul 12;2:701509.

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